GWAS-related meQTLs across different cancer types

We identified 2,214,458 meQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "BLCA"
e.g., "rs10000012"
e.g., "CTBP1"
e.g., "cg02980000"
Cancer type
QTL type
tagSNP
LD
SNP ID
SNP position (hg19)
alleles
probe
Gene position (hg19)
Gene
Beta
t-stat
r
p-value
Traits
BLCA trans rs923375 1 rs923375 chr17:3393068 C/T cg05539622 chr2:73298971 SFXN5 0.44 7.16 0.34 4.16E-12 Myopia (pathological);
BLCA trans rs923375 1 rs923375 chr17:3393068 C/T cg10104683 chr2:20424989 SDC1 0.44 6.98 0.34 1.31E-11 Myopia (pathological);
BLCA trans rs9354352 0.935 rs9345749 chr6:66699892 G/T cg05351201 chr14:89029602 ZC3H14 0.42 6.9 0.33 2.14E-11 Initial pursuit acceleration in psychotic disorders;
BLCA trans rs9354352 0.935 rs9345749 chr6:66699892 G/T cg15074876 chr1:110950234 HBXIP 0.38 6.29 0.31 8.57E-10 Initial pursuit acceleration in psychotic disorders;